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Sample GSM1539430 Query DataSets for GSM1539430
Status Public on Aug 05, 2015
Title 7196843032_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 75
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZMCI015
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.087590811
ILMN_1806310 6.032307439
ILMN_1653355 6.044382989
ILMN_1705025 6.033077946
ILMN_1814316 6.031992309
ILMN_3241953 6.221272781
ILMN_1735045 6.050464497
ILMN_1680754 6.055611453
ILMN_1659452 6.071209486
ILMN_1767388 6.063342533
ILMN_1755321 6.16892423
ILMN_1698554 6.222925056
ILMN_1814092 6.168194503
ILMN_2061446 6.960249763
ILMN_1676336 6.341314275
ILMN_1752884 6.02308779
ILMN_1668851 6.004692258
ILMN_1726986 6.019564893
ILMN_3237396 6.534462083
ILMN_1688755 7.804577279

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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