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Sample GSM1539413 Query DataSets for GSM1539413
Status Public on Aug 05, 2015
Title 7196843065_L
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 66
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSMCI023
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.154938288
ILMN_1806310 6.002227218
ILMN_1653355 6.02013675
ILMN_1705025 6.078827414
ILMN_1814316 6.049432079
ILMN_3241953 6.111665152
ILMN_1735045 5.98846996
ILMN_1680754 6.181509473
ILMN_1659452 6.096123267
ILMN_1767388 6.103780812
ILMN_1755321 6.033672951
ILMN_1698554 6.29935088
ILMN_1814092 6.325277849
ILMN_2061446 7.393697367
ILMN_1676336 6.284203306
ILMN_1752884 6.035418922
ILMN_1668851 6.013761582
ILMN_1726986 6.191907549
ILMN_3237396 6.545463904
ILMN_1688755 7.585100179

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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