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Sample GSM1539407 Query DataSets for GSM1539407
Status Public on Aug 05, 2015
Title 4856076026_H
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 87
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LND0131
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.567928422
ILMN_2383229 7.38500379
ILMN_1806310 7.456275637
ILMN_1779670 7.582702757
ILMN_2321282 7.57821123
ILMN_1671474 7.51336449
ILMN_1772582 7.465247427
ILMN_1653355 7.677255709
ILMN_1717783 7.457232917
ILMN_1705025 7.423747582
ILMN_2359168 7.376694791
ILMN_1731507 7.391298821
ILMN_1787689 7.651193394
ILMN_1745607 7.414948584
ILMN_1668111 7.332304573
ILMN_1735045 7.471363327
ILMN_1680754 7.499588363
ILMN_1659452 7.422271801
ILMN_1767388 7.479234199
ILMN_1755321 7.63163375

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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