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Sample GSM1539406 Query DataSets for GSM1539406
Status Public on Aug 05, 2015
Title 4856050046_F
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 87
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LND0052
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.545534504
ILMN_2383229 7.365188843
ILMN_1806310 7.411622438
ILMN_1779670 7.497207197
ILMN_2321282 7.539473446
ILMN_1671474 7.431059442
ILMN_1772582 7.460190816
ILMN_1653355 7.647467234
ILMN_1717783 7.373266573
ILMN_1705025 7.540302325
ILMN_2359168 7.491951352
ILMN_1731507 7.394810941
ILMN_1787689 7.597456763
ILMN_1745607 7.497500864
ILMN_1668111 7.381800922
ILMN_1735045 7.411592932
ILMN_1680754 7.528927748
ILMN_1659452 7.465587022
ILMN_1767388 7.642662726
ILMN_1755321 7.688501114

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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