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Sample GSM1539405 Query DataSets for GSM1539405
Status Public on Aug 05, 2015
Title 4856050009_E
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 81
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LND0159
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.60609932
ILMN_2383229 7.476446144
ILMN_1806310 7.507259223
ILMN_1779670 7.557032073
ILMN_2321282 7.575733748
ILMN_1671474 7.365985774
ILMN_1772582 7.43059778
ILMN_1653355 7.682978025
ILMN_1717783 7.431597401
ILMN_1705025 7.485963032
ILMN_2359168 7.315936783
ILMN_1731507 7.515051553
ILMN_1787689 7.700166583
ILMN_1745607 7.452686815
ILMN_1668111 7.424000094
ILMN_1735045 7.488986382
ILMN_1680754 7.509968757
ILMN_1659452 7.370306453
ILMN_1767388 7.479580696
ILMN_1755321 7.741210721

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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