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Sample GSM1539398 Query DataSets for GSM1539398
Status Public on Aug 05, 2015
Title 4856076027_E
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 78
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSM0013
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.783713155
ILMN_2383229 7.534760443
ILMN_1806310 7.507822942
ILMN_1779670 7.500149896
ILMN_2321282 7.526814841
ILMN_1671474 7.565267553
ILMN_1772582 7.432786496
ILMN_1653355 8.023421767
ILMN_1717783 7.357397017
ILMN_1705025 7.35293881
ILMN_2359168 7.424407967
ILMN_1731507 7.45966967
ILMN_1787689 7.582916313
ILMN_1745607 7.400015861
ILMN_1668111 7.443714738
ILMN_1735045 7.459976308
ILMN_1680754 7.463286353
ILMN_1659452 7.359165546
ILMN_1767388 7.43720289
ILMN_1755321 7.75835081

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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