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Sample GSM1539396 Query DataSets for GSM1539396
Status Public on Aug 05, 2015
Title 4856076025_L
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 90
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSM0007
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.530405785
ILMN_2383229 7.520350127
ILMN_1806310 7.518638306
ILMN_1779670 7.466179395
ILMN_2321282 7.642394553
ILMN_1671474 7.460051208
ILMN_1772582 7.515891258
ILMN_1653355 7.714007049
ILMN_1717783 7.320390377
ILMN_1705025 7.440543885
ILMN_2359168 7.38126451
ILMN_1731507 7.491805143
ILMN_1787689 7.594888284
ILMN_1745607 7.445699898
ILMN_1668111 7.403137967
ILMN_1735045 7.523922186
ILMN_1680754 7.470191986
ILMN_1659452 7.343914432
ILMN_1767388 7.38568831
ILMN_1755321 7.731837329

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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