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Sample GSM1539387 Query DataSets for GSM1539387
Status Public on Aug 05, 2015
Title 4856076019_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 74
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGM0030
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.545311982
ILMN_2383229 7.4631767
ILMN_1806310 7.531734697
ILMN_1779670 7.52204901
ILMN_2321282 7.517144193
ILMN_1671474 7.383337747
ILMN_1772582 7.409410707
ILMN_1653355 7.653174836
ILMN_1717783 7.362094417
ILMN_1705025 7.447615594
ILMN_2359168 7.394277335
ILMN_1731507 7.383408796
ILMN_1787689 7.616527601
ILMN_1745607 7.460639754
ILMN_1668111 7.406682315
ILMN_1735045 7.383009199
ILMN_1680754 7.537299669
ILMN_1659452 7.545217593
ILMN_1767388 7.494311942
ILMN_1755321 7.618224795

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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