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Sample GSM1539386 Query DataSets for GSM1539386
Status Public on Aug 05, 2015
Title 4856076018_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 83
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description TLSM0606
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.586283683
ILMN_2383229 7.431970096
ILMN_1806310 7.453306887
ILMN_1779670 7.431477708
ILMN_2321282 7.578195593
ILMN_1671474 7.379014513
ILMN_1772582 7.510052093
ILMN_1653355 7.636753952
ILMN_1717783 7.367493132
ILMN_1705025 7.385479333
ILMN_2359168 7.306462485
ILMN_1731507 7.475894648
ILMN_1787689 7.501726851
ILMN_1745607 7.368749149
ILMN_1668111 7.40759072
ILMN_1735045 7.458330188
ILMN_1680754 7.591841843
ILMN_1659452 7.449952463
ILMN_1767388 7.470598337
ILMN_1755321 7.652748924

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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