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Sample GSM1539385 Query DataSets for GSM1539385
Status Public on Aug 05, 2015
Title 4856076017_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 81
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGM0047
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.570048707
ILMN_2383229 7.470486871
ILMN_1806310 7.409488473
ILMN_1779670 7.548510542
ILMN_2321282 7.572550775
ILMN_1671474 7.502182186
ILMN_1772582 7.4976606
ILMN_1653355 7.707888823
ILMN_1717783 7.33541308
ILMN_1705025 7.434581486
ILMN_2359168 7.433370046
ILMN_1731507 7.482788564
ILMN_1787689 7.479259847
ILMN_1745607 7.371903651
ILMN_1668111 7.453224957
ILMN_1735045 7.46622889
ILMN_1680754 7.560580782
ILMN_1659452 7.41705709
ILMN_1767388 7.457701671
ILMN_1755321 7.62654635

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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