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Sample GSM1539384 Query DataSets for GSM1539384
Status Public on Aug 05, 2015
Title 4856076017_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 82
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LND0121
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.627610002
ILMN_2383229 7.335078988
ILMN_1806310 7.482975362
ILMN_1779670 7.493120191
ILMN_2321282 7.613684752
ILMN_1671474 7.405557165
ILMN_1772582 7.45238565
ILMN_1653355 7.918767925
ILMN_1717783 7.353554555
ILMN_1705025 7.417266144
ILMN_2359168 7.415320279
ILMN_1731507 7.347850886
ILMN_1787689 7.622731458
ILMN_1745607 7.462237628
ILMN_1668111 7.415564792
ILMN_1735045 7.339445812
ILMN_1680754 7.421373079
ILMN_1659452 7.392186554
ILMN_1767388 7.38162275
ILMN_1755321 7.513527577

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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