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Sample GSM1539383 Query DataSets for GSM1539383
Status Public on Aug 05, 2015
Title 4856076008_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 78
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOM0013
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.433180597
ILMN_2383229 7.530208541
ILMN_1806310 7.466653823
ILMN_1779670 7.443958972
ILMN_2321282 7.57605682
ILMN_1671474 7.46866026
ILMN_1772582 7.492420741
ILMN_1653355 7.593316135
ILMN_1717783 7.423738175
ILMN_1705025 7.42343858
ILMN_2359168 7.394763313
ILMN_1731507 7.518114816
ILMN_1787689 7.596828017
ILMN_1745607 7.352626515
ILMN_1668111 7.55094439
ILMN_1735045 7.519735947
ILMN_1680754 7.623337168
ILMN_1659452 7.47854571
ILMN_1767388 7.392336555
ILMN_1755321 7.629194269

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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