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Sample GSM1539374 Query DataSets for GSM1539374
Status Public on Aug 05, 2015
Title 4856050046_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 78
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGM0049
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.554853043
ILMN_2383229 7.384640174
ILMN_1806310 7.416280351
ILMN_1779670 7.569138353
ILMN_2321282 7.605034041
ILMN_1671474 7.503760832
ILMN_1772582 7.51427331
ILMN_1653355 7.630947319
ILMN_1717783 7.378872393
ILMN_1705025 7.496888694
ILMN_2359168 7.38075841
ILMN_1731507 7.378782156
ILMN_1787689 7.535988566
ILMN_1745607 7.508013623
ILMN_1668111 7.381382831
ILMN_1735045 7.381917201
ILMN_1680754 7.439091768
ILMN_1659452 7.44117837
ILMN_1767388 7.411943275
ILMN_1755321 7.597989444

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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