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Sample GSM1539369 Query DataSets for GSM1539369
Status Public on Aug 05, 2015
Title 4856050003_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 79
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGM0011
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.684695872
ILMN_2383229 7.589943337
ILMN_1806310 7.463504503
ILMN_1779670 7.501687653
ILMN_2321282 7.482292873
ILMN_1671474 7.476395557
ILMN_1772582 7.396724439
ILMN_1653355 7.724680245
ILMN_1717783 7.395861029
ILMN_1705025 7.432786496
ILMN_2359168 7.407689881
ILMN_1731507 7.555440425
ILMN_1787689 7.530513145
ILMN_1745607 7.470303465
ILMN_1668111 7.415198701
ILMN_1735045 7.312899128
ILMN_1680754 7.473120147
ILMN_1659452 7.418807402
ILMN_1767388 7.595503599
ILMN_1755321 7.546799244

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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