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Sample GSM1539357 Query DataSets for GSM1539357
Status Public on Aug 05, 2015
Title 4856076022_L
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 78
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSC0027
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.646406135
ILMN_2383229 7.394349806
ILMN_1806310 7.485366809
ILMN_1779670 7.429577295
ILMN_2321282 7.46841168
ILMN_1671474 7.460572184
ILMN_1772582 7.491328638
ILMN_1653355 7.763682748
ILMN_1717783 7.394196334
ILMN_1705025 7.478410062
ILMN_2359168 7.424969412
ILMN_1731507 7.432948998
ILMN_1787689 7.686457838
ILMN_1745607 7.512031516
ILMN_1668111 7.51823977
ILMN_1735045 7.526322464
ILMN_1680754 7.68242126
ILMN_1659452 7.421016101
ILMN_1767388 7.469983022
ILMN_1755321 7.620676979

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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