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Sample GSM1539351 Query DataSets for GSM1539351
Status Public on Aug 05, 2015
Title 4856076018_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 86
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description TLSC0719
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.599942759
ILMN_2383229 7.450904687
ILMN_1806310 7.393661036
ILMN_1779670 7.495754732
ILMN_2321282 7.4816238
ILMN_1671474 7.390710472
ILMN_1772582 7.442651546
ILMN_1653355 7.724496053
ILMN_1717783 7.454886135
ILMN_1705025 7.358499624
ILMN_2359168 7.391137492
ILMN_1731507 7.491550542
ILMN_1787689 7.661880477
ILMN_1745607 7.369487161
ILMN_1668111 7.465788958
ILMN_1735045 7.401558481
ILMN_1680754 7.540050372
ILMN_1659452 7.410028892
ILMN_1767388 7.552004446
ILMN_1755321 7.675733023

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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