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Sample GSM1539308 Query DataSets for GSM1539308
Status Public on Aug 05, 2015
Title 4856076008_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 74
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGM0019
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.587460745
ILMN_2383229 7.498659527
ILMN_1806310 7.4435425
ILMN_1779670 7.413979174
ILMN_2321282 7.608251421
ILMN_1671474 7.497548153
ILMN_1772582 7.52930931
ILMN_1653355 7.573532747
ILMN_1717783 7.508013623
ILMN_1705025 7.364673823
ILMN_2359168 7.467094563
ILMN_1731507 7.53337351
ILMN_1787689 7.506926255
ILMN_1745607 7.426521962
ILMN_1668111 7.382885501
ILMN_1735045 7.386761951
ILMN_1680754 7.46922041
ILMN_1659452 7.350443671
ILMN_1767388 7.458055537
ILMN_1755321 7.668023165

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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