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Sample GSM1539299 Query DataSets for GSM1539299
Status Public on Aug 05, 2015
Title 4856050048_F
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 78
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGM0006
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.582232633
ILMN_2383229 7.377814785
ILMN_1806310 7.393197525
ILMN_1779670 7.464471291
ILMN_2321282 7.555789586
ILMN_1671474 7.500305092
ILMN_1772582 7.440660895
ILMN_1653355 7.681603278
ILMN_1717783 7.368729375
ILMN_1705025 7.434992135
ILMN_2359168 7.492330794
ILMN_1731507 7.369837022
ILMN_1787689 7.60036665
ILMN_1745607 7.407333907
ILMN_1668111 7.521063172
ILMN_1735045 7.375415236
ILMN_1680754 7.530794964
ILMN_1659452 7.433018863
ILMN_1767388 7.506261457
ILMN_1755321 7.589466681

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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