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Sample GSM1539298 Query DataSets for GSM1539298
Status Public on Aug 05, 2015
Title 4856050048_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 84
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGM0009
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.587320817
ILMN_2383229 7.45065113
ILMN_1806310 7.470965979
ILMN_1779670 7.44628817
ILMN_2321282 7.527520372
ILMN_1671474 7.389624316
ILMN_1772582 7.346383622
ILMN_1653355 7.689199278
ILMN_1717783 7.332253748
ILMN_1705025 7.627535929
ILMN_2359168 7.391610512
ILMN_1731507 7.359562885
ILMN_1787689 7.569372768
ILMN_1745607 7.437828137
ILMN_1668111 7.442198368
ILMN_1735045 7.522308409
ILMN_1680754 7.542286635
ILMN_1659452 7.463641601
ILMN_1767388 7.491481335
ILMN_1755321 7.687351166

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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