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Sample GSM1539285 Query DataSets for GSM1539285
Status Public on Aug 05, 2015
Title 4856076030_J
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 79
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGA0033
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.54831279
ILMN_2383229 7.318196814
ILMN_1806310 7.485821234
ILMN_1779670 7.505953941
ILMN_2321282 7.569341562
ILMN_1671474 7.415666407
ILMN_1772582 7.53131117
ILMN_1653355 7.612758193
ILMN_1717783 7.314928993
ILMN_1705025 7.424137609
ILMN_2359168 7.468805795
ILMN_1731507 7.454541
ILMN_1787689 7.555143357
ILMN_1745607 7.44795502
ILMN_1668111 7.543185899
ILMN_1735045 7.495038039
ILMN_1680754 7.609613201
ILMN_1659452 7.453192181
ILMN_1767388 7.447558908
ILMN_1755321 7.781401583

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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