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Sample GSM1539280 Query DataSets for GSM1539280
Status Public on Aug 05, 2015
Title 4856076029_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Other Caucasian
age: 83
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSA0019
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.521841681
ILMN_2383229 7.418926416
ILMN_1806310 7.481525417
ILMN_1779670 7.425955818
ILMN_2321282 7.530794964
ILMN_1671474 7.399076755
ILMN_1772582 7.497698319
ILMN_1653355 7.568085532
ILMN_1717783 7.3949057
ILMN_1705025 7.448989191
ILMN_2359168 7.426629821
ILMN_1731507 7.501612974
ILMN_1787689 7.561289877
ILMN_1745607 7.457537465
ILMN_1668111 7.332253748
ILMN_1735045 7.416869525
ILMN_1680754 7.472260985
ILMN_1659452 7.550985282
ILMN_1767388 7.530394314
ILMN_1755321 7.665263733

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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