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Sample GSM1539273 Query DataSets for GSM1539273
Status Public on Aug 05, 2015
Title 4856076023_C
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 76
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGA0025
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.52620849
ILMN_2383229 7.399332647
ILMN_1806310 7.561260701
ILMN_1779670 7.517068491
ILMN_2321282 7.565152882
ILMN_1671474 7.383539155
ILMN_1772582 7.453165944
ILMN_1653355 7.637643547
ILMN_1717783 7.372515418
ILMN_1705025 7.438274507
ILMN_2359168 7.362755716
ILMN_1731507 7.504150429
ILMN_1787689 7.586156399
ILMN_1745607 7.44247649
ILMN_1668111 7.513586211
ILMN_1735045 7.456547098
ILMN_1680754 7.476865382
ILMN_1659452 7.429422317
ILMN_1767388 7.407610297
ILMN_1755321 7.625855222

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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