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Sample GSM1539271 Query DataSets for GSM1539271
Status Public on Aug 05, 2015
Title 4856076019_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 78
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOA0030
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.660795538
ILMN_2383229 7.495669428
ILMN_1806310 7.48638297
ILMN_1779670 7.49286283
ILMN_2321282 7.410247099
ILMN_1671474 7.571366582
ILMN_1772582 7.48294005
ILMN_1653355 7.747915908
ILMN_1717783 7.478254826
ILMN_1705025 7.484376104
ILMN_2359168 7.533075428
ILMN_1731507 7.40520496
ILMN_1787689 7.578504468
ILMN_1745607 7.410275929
ILMN_1668111 7.355055361
ILMN_1735045 7.400502397
ILMN_1680754 7.833554802
ILMN_1659452 7.384873342
ILMN_1767388 7.459759682
ILMN_1755321 7.645176914

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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