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Sample GSM1539225 Query DataSets for GSM1539225
Status Public on Aug 05, 2015
Title 4856076041_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Other Caucasian
age: 71
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSA0049
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.689665068
ILMN_2383229 7.394020411
ILMN_1806310 7.547005957
ILMN_1779670 7.43265074
ILMN_2321282 7.591651995
ILMN_1671474 7.348271353
ILMN_1772582 7.440977671
ILMN_1653355 7.680633001
ILMN_1717783 7.333552798
ILMN_1705025 7.400147919
ILMN_2359168 7.359327782
ILMN_1731507 7.589280902
ILMN_1787689 7.607596974
ILMN_1745607 7.387279078
ILMN_1668111 7.453502236
ILMN_1735045 7.421589693
ILMN_1680754 7.529873739
ILMN_1659452 7.437885761
ILMN_1767388 7.434769576
ILMN_1755321 7.58853267

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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