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Sample GSM1539222 Query DataSets for GSM1539222
Status Public on Aug 05, 2015
Title 4856076041_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 69
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGA0006
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.594770396
ILMN_2383229 7.472380109
ILMN_1806310 7.455427472
ILMN_1779670 7.465913652
ILMN_2321282 7.578762196
ILMN_1671474 7.385659782
ILMN_1772582 7.415068422
ILMN_1653355 7.684204587
ILMN_1717783 7.408581467
ILMN_1705025 7.43059778
ILMN_2359168 7.485116654
ILMN_1731507 7.505844511
ILMN_1787689 7.533490046
ILMN_1745607 7.463831292
ILMN_1668111 7.417424027
ILMN_1735045 7.355028101
ILMN_1680754 7.580529556
ILMN_1659452 7.42310439
ILMN_1767388 7.474964018
ILMN_1755321 7.756452397

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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