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Sample GSM1539212 Query DataSets for GSM1539212
Status Public on Aug 05, 2015
Title 4856076040_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 72
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGA0004
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.686259417
ILMN_2383229 7.345513856
ILMN_1806310 7.456781942
ILMN_1779670 7.544226211
ILMN_2321282 7.453825902
ILMN_1671474 7.412758068
ILMN_1772582 7.458206574
ILMN_1653355 7.59227949
ILMN_1717783 7.442131278
ILMN_1705025 7.445542384
ILMN_2359168 7.486953837
ILMN_1731507 7.583298647
ILMN_1787689 7.565727331
ILMN_1745607 7.454646296
ILMN_1668111 7.563336423
ILMN_1735045 7.484001226
ILMN_1680754 7.650870065
ILMN_1659452 7.415507226
ILMN_1767388 7.471552031
ILMN_1755321 7.634221688

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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