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Sample GSM1539211 Query DataSets for GSM1539211
Status Public on Aug 05, 2015
Title 4856076018_K
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Unknown
age: 72
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZA0034
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.607509445
ILMN_2383229 7.417939274
ILMN_1806310 7.422834816
ILMN_1779670 7.474196258
ILMN_2321282 7.463302156
ILMN_1671474 7.497407021
ILMN_1772582 7.456242564
ILMN_1653355 7.943066648
ILMN_1717783 7.344308812
ILMN_1705025 7.466188538
ILMN_2359168 7.396170909
ILMN_1731507 7.411079963
ILMN_1787689 7.616294371
ILMN_1745607 7.419216335
ILMN_1668111 7.376269208
ILMN_1735045 7.317292848
ILMN_1680754 7.554780359
ILMN_1659452 7.49780619
ILMN_1767388 7.570064783
ILMN_1755321 7.6273805

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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