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Sample GSM1539210 Query DataSets for GSM1539210
Status Public on Aug 05, 2015
Title 4856050047_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 72
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOA0040
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.769360791
ILMN_2383229 7.384068492
ILMN_1806310 7.590351693
ILMN_1779670 7.552356989
ILMN_2321282 7.4901578
ILMN_1671474 7.52820588
ILMN_1772582 7.647584235
ILMN_1653355 7.79528959
ILMN_1717783 7.392047622
ILMN_1705025 7.369764173
ILMN_2359168 7.338047665
ILMN_1731507 7.361122042
ILMN_1787689 7.423588371
ILMN_1745607 7.419431243
ILMN_1668111 7.421434155
ILMN_1735045 7.324926185
ILMN_1680754 7.445334001
ILMN_1659452 7.55286212
ILMN_1767388 7.465298709
ILMN_1755321 7.601732805

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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