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Sample GSM1539195 Query DataSets for GSM1539195
Status Public on Aug 05, 2015
Title 4856076028_L
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 68
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOA0002
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.67246237
ILMN_2383229 7.4447055
ILMN_1806310 7.403001019
ILMN_1779670 7.358920865
ILMN_2321282 7.589830513
ILMN_1671474 7.420507873
ILMN_1772582 7.459539472
ILMN_1653355 7.670582361
ILMN_1717783 7.384845112
ILMN_1705025 7.375200998
ILMN_2359168 7.511106307
ILMN_1731507 7.469325176
ILMN_1787689 7.595461758
ILMN_1745607 7.376921858
ILMN_1668111 7.369127426
ILMN_1735045 7.420053785
ILMN_1680754 7.622464282
ILMN_1659452 7.475521593
ILMN_1767388 7.423669654
ILMN_1755321 7.691315264

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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