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Sample GSM1539175 Query DataSets for GSM1539175
Status Public on Aug 05, 2015
Title 4856050046_L
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 71
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LND0051
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.555715656
ILMN_2383229 7.380046094
ILMN_1806310 7.408883379
ILMN_1779670 7.492255331
ILMN_2321282 7.619642366
ILMN_1671474 7.335365317
ILMN_1772582 7.523952801
ILMN_1653355 7.554919327
ILMN_1717783 7.335315332
ILMN_1705025 7.408824496
ILMN_2359168 7.439941106
ILMN_1731507 7.463831292
ILMN_1787689 7.547338706
ILMN_1745607 7.436018259
ILMN_1668111 7.473354115
ILMN_1735045 7.468889448
ILMN_1680754 7.454269433
ILMN_1659452 7.493820799
ILMN_1767388 7.493811116
ILMN_1755321 7.679191053

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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