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Sample GSM1539171 Query DataSets for GSM1539171
Status Public on Aug 05, 2015
Title 4856076038_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 69
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZC0010
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.527647617
ILMN_2383229 7.47376679
ILMN_1806310 7.504774087
ILMN_1779670 7.460639754
ILMN_2321282 7.470736622
ILMN_1671474 7.525243059
ILMN_1772582 7.400205292
ILMN_1653355 7.570982458
ILMN_1717783 7.429961678
ILMN_1705025 7.426368319
ILMN_2359168 7.450109653
ILMN_1731507 7.474393247
ILMN_1787689 7.608384042
ILMN_1745607 7.416099923
ILMN_1668111 7.365559645
ILMN_1735045 7.518391258
ILMN_1680754 7.508398256
ILMN_1659452 7.499188353
ILMN_1767388 7.476060367
ILMN_1755321 7.680780919

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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