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Sample GSM1539160 Query DataSets for GSM1539160
Status Public on Aug 05, 2015
Title 4856076030_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 59
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOC0004
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.531569688
ILMN_2383229 7.382033506
ILMN_1806310 7.547523161
ILMN_1779670 7.493663258
ILMN_2321282 7.570936751
ILMN_1671474 7.408813281
ILMN_1772582 7.478620296
ILMN_1653355 7.579480282
ILMN_1717783 7.359846376
ILMN_1705025 7.480481249
ILMN_2359168 7.351334214
ILMN_1731507 7.457718581
ILMN_1787689 7.644776875
ILMN_1745607 7.482647391
ILMN_1668111 7.35500008
ILMN_1735045 7.531769312
ILMN_1680754 7.477406885
ILMN_1659452 7.442617847
ILMN_1767388 7.470667113
ILMN_1755321 7.63248211

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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