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Sample GSM1539158 Query DataSets for GSM1539158
Status Public on Aug 05, 2015
Title 4856050047_F
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 75
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGC0015
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.557906317
ILMN_2383229 7.375333451
ILMN_1806310 7.567080505
ILMN_1779670 7.617371287
ILMN_2321282 7.699531038
ILMN_1671474 7.395241256
ILMN_1772582 7.499371915
ILMN_1653355 7.766950993
ILMN_1717783 7.327552537
ILMN_1705025 7.490896144
ILMN_2359168 7.453931324
ILMN_1731507 7.494732533
ILMN_1787689 7.478792405
ILMN_1745607 7.493543177
ILMN_1668111 7.368710422
ILMN_1735045 7.541230548
ILMN_1680754 7.425539199
ILMN_1659452 7.438075054
ILMN_1767388 7.554482569
ILMN_1755321 7.73878518

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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