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Sample GSM1539144 Query DataSets for GSM1539144
Status Public on Aug 05, 2015
Title 4856050047_J
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 71
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LND0086
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.531352586
ILMN_2383229 7.336214631
ILMN_1806310 7.534117375
ILMN_1779670 7.43721076
ILMN_2321282 7.600786354
ILMN_1671474 7.430183619
ILMN_1772582 7.438863427
ILMN_1653355 7.656883687
ILMN_1717783 7.357846746
ILMN_1705025 7.451696797
ILMN_2359168 7.343481699
ILMN_1731507 7.574984106
ILMN_1787689 7.745191615
ILMN_1745607 7.466344432
ILMN_1668111 7.347032818
ILMN_1735045 7.393768521
ILMN_1680754 7.529045899
ILMN_1659452 7.38400127
ILMN_1767388 7.36662015
ILMN_1755321 7.748976663

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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