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Sample GSM1539141 Query DataSets for GSM1539141
Status Public on Aug 05, 2015
Title 4856076002_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 70
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LND0010
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.648285984
ILMN_2383229 7.509310144
ILMN_1806310 7.479120736
ILMN_1779670 7.433352875
ILMN_2321282 7.652061144
ILMN_1671474 7.442806101
ILMN_1772582 7.368206956
ILMN_1653355 7.574632307
ILMN_1717783 7.318104933
ILMN_1705025 7.448721243
ILMN_2359168 7.408008646
ILMN_1731507 7.517794251
ILMN_1787689 7.538784662
ILMN_1745607 7.524386542
ILMN_1668111 7.445317288
ILMN_1735045 7.409656715
ILMN_1680754 7.498693973
ILMN_1659452 7.504463203
ILMN_1767388 7.552323316
ILMN_1755321 7.730775878

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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