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Sample GSM1539121 Query DataSets for GSM1539121
Status Public on Aug 05, 2015
Title 4856076029_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Other Caucasian
age: 64
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOC0008
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.647377198
ILMN_2383229 7.49957839
ILMN_1806310 7.440526791
ILMN_1779670 7.478949468
ILMN_2321282 7.495184031
ILMN_1671474 7.474376971
ILMN_1772582 7.470362111
ILMN_1653355 7.586082401
ILMN_1717783 7.354323628
ILMN_1705025 7.481473359
ILMN_2359168 7.470554753
ILMN_1731507 7.546091173
ILMN_1787689 7.449302704
ILMN_1745607 7.48963327
ILMN_1668111 7.41043396
ILMN_1735045 7.482932006
ILMN_1680754 7.617597845
ILMN_1659452 7.451753947
ILMN_1767388 7.591954654
ILMN_1755321 7.573449683

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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