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Sample GSM1539120 Query DataSets for GSM1539120
Status Public on Aug 05, 2015
Title 4856050048_J
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 60
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOC0005
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.557307919
ILMN_2383229 7.391895244
ILMN_1806310 7.447468632
ILMN_1779670 7.575663442
ILMN_2321282 7.446445274
ILMN_1671474 7.34843922
ILMN_1772582 7.513125333
ILMN_1653355 7.655676042
ILMN_1717783 7.353995903
ILMN_1705025 7.411553163
ILMN_2359168 7.269290426
ILMN_1731507 7.464467047
ILMN_1787689 7.65912045
ILMN_1745607 7.412265916
ILMN_1668111 7.475083941
ILMN_1735045 7.398822077
ILMN_1680754 7.452978077
ILMN_1659452 7.355373363
ILMN_1767388 7.528809925
ILMN_1755321 7.607234381

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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