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Sample GSM1539117 Query DataSets for GSM1539117
Status Public on Aug 05, 2015
Title 4856050059_C
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 72
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSM0016
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.532135585
ILMN_2383229 7.470052694
ILMN_1806310 7.482415421
ILMN_1779670 7.451802781
ILMN_2321282 7.666555281
ILMN_1671474 7.406341301
ILMN_1772582 7.512970511
ILMN_1653355 7.576861471
ILMN_1717783 7.336594142
ILMN_1705025 7.369301234
ILMN_2359168 7.416418721
ILMN_1731507 7.519864775
ILMN_1787689 7.617897376
ILMN_1745607 7.36073
ILMN_1668111 7.530335321
ILMN_1735045 7.516610466
ILMN_1680754 7.555007893
ILMN_1659452 7.495815605
ILMN_1767388 7.481354129
ILMN_1755321 7.719603654

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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