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Sample GSM1539114 Query DataSets for GSM1539114
Status Public on Aug 05, 2015
Title 4856076025_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 71
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSM0019
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.726319248
ILMN_2383229 7.50044882
ILMN_1806310 7.553030453
ILMN_1779670 7.606996186
ILMN_2321282 7.463707008
ILMN_1671474 7.437570484
ILMN_1772582 7.486972814
ILMN_1653355 7.852282555
ILMN_1717783 7.340194478
ILMN_1705025 7.419679227
ILMN_2359168 7.496610573
ILMN_1731507 7.44440714
ILMN_1787689 7.510781677
ILMN_1745607 7.456464705
ILMN_1668111 7.410667078
ILMN_1735045 7.622513431
ILMN_1680754 7.452217461
ILMN_1659452 7.383946431
ILMN_1767388 7.397676134
ILMN_1755321 7.552681533

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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