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Sample GSM1539098 Query DataSets for GSM1539098
Status Public on Aug 05, 2015
Title 4856076027_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 74
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSM0004
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.712369585
ILMN_2383229 7.448932376
ILMN_1806310 7.531933083
ILMN_1779670 7.482327164
ILMN_2321282 7.517237188
ILMN_1671474 7.481310177
ILMN_1772582 7.561514089
ILMN_1653355 7.731640115
ILMN_1717783 7.382018167
ILMN_1705025 7.535781315
ILMN_2359168 7.376018478
ILMN_1731507 7.512797031
ILMN_1787689 7.578246634
ILMN_1745607 7.49284557
ILMN_1668111 7.374093112
ILMN_1735045 7.431229487
ILMN_1680754 7.466913775
ILMN_1659452 7.408923503
ILMN_1767388 7.329938943
ILMN_1755321 7.735942603

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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