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Sample GSM1539097 Query DataSets for GSM1539097
Status Public on Aug 05, 2015
Title 4856076025_H
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 72
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description TLSM0607
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.529826604
ILMN_2383229 7.459661249
ILMN_1806310 7.410846316
ILMN_1779670 7.662143626
ILMN_2321282 7.486646568
ILMN_1671474 7.467604919
ILMN_1772582 7.529900917
ILMN_1653355 7.745502283
ILMN_1717783 7.475692614
ILMN_1705025 7.533414422
ILMN_2359168 7.378531901
ILMN_1731507 7.373458063
ILMN_1787689 7.55214441
ILMN_1745607 7.469676398
ILMN_1668111 7.415359301
ILMN_1735045 7.516330474
ILMN_1680754 7.452435031
ILMN_1659452 7.451945273
ILMN_1767388 7.415715846
ILMN_1755321 7.619152979

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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