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Sample GSM1539091 Query DataSets for GSM1539091
Status Public on Aug 05, 2015
Title 4856050046_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 70
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGM0029
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.616040328
ILMN_2383229 7.455189867
ILMN_1806310 7.428675069
ILMN_1779670 7.466885678
ILMN_2321282 7.570646039
ILMN_1671474 7.406549957
ILMN_1772582 7.430562117
ILMN_1653355 7.63966461
ILMN_1717783 7.41845985
ILMN_1705025 7.49206206
ILMN_2359168 7.407333907
ILMN_1731507 7.452106895
ILMN_1787689 7.565650419
ILMN_1745607 7.42564478
ILMN_1668111 7.470299305
ILMN_1735045 7.408973943
ILMN_1680754 7.460373145
ILMN_1659452 7.48967749
ILMN_1767388 7.48796213
ILMN_1755321 7.658997399

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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