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Sample GSM1539088 Query DataSets for GSM1539088
Status Public on Aug 05, 2015
Title 4856076040_C
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 69
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSM0006
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.617148857
ILMN_2383229 7.369688674
ILMN_1806310 7.430345814
ILMN_1779670 7.413165682
ILMN_2321282 7.624914739
ILMN_1671474 7.431443627
ILMN_1772582 7.472154421
ILMN_1653355 7.63525078
ILMN_1717783 7.399222378
ILMN_1705025 7.441270298
ILMN_2359168 7.331543019
ILMN_1731507 7.462851556
ILMN_1787689 7.572847059
ILMN_1745607 7.362017275
ILMN_1668111 7.345719911
ILMN_1735045 7.382742152
ILMN_1680754 7.509315178
ILMN_1659452 7.457664588
ILMN_1767388 7.404351287
ILMN_1755321 7.689551815

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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