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Sample GSM1539084 Query DataSets for GSM1539084
Status Public on Aug 05, 2015
Title 4856076002_E
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 67
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description TLSM0603
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.678150401
ILMN_2383229 7.354241256
ILMN_1806310 7.446428777
ILMN_1779670 7.450938275
ILMN_2321282 7.615672643
ILMN_1671474 7.406876893
ILMN_1772582 7.439417309
ILMN_1653355 7.676041474
ILMN_1717783 7.375251246
ILMN_1705025 7.392484479
ILMN_2359168 7.368614821
ILMN_1731507 7.40301121
ILMN_1787689 7.559468366
ILMN_1745607 7.399299425
ILMN_1668111 7.458149027
ILMN_1735045 7.428501914
ILMN_1680754 7.436985534
ILMN_1659452 7.385288942
ILMN_1767388 7.437235439
ILMN_1755321 7.761655462

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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