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Sample GSM1539081 Query DataSets for GSM1539081
Status Public on Aug 05, 2015
Title 4856050047_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 66
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSM0021
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.672496374
ILMN_2383229 7.414576754
ILMN_1806310 7.469145833
ILMN_1779670 7.505309573
ILMN_2321282 7.687544291
ILMN_1671474 7.371831246
ILMN_1772582 7.395265981
ILMN_1653355 7.905122969
ILMN_1717783 7.564370402
ILMN_1705025 7.486195734
ILMN_2359168 7.365313681
ILMN_1731507 7.589811584
ILMN_1787689 7.757464178
ILMN_1745607 7.356446174
ILMN_1668111 7.413901858
ILMN_1735045 7.445266519
ILMN_1680754 7.656973663
ILMN_1659452 7.39655098
ILMN_1767388 7.525159233
ILMN_1755321 7.612667456

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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