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Sample GSM1539080 Query DataSets for GSM1539080
Status Public on Aug 05, 2015
Title 4856050008_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 65
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGM0031
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.600951059
ILMN_2383229 7.401990858
ILMN_1806310 7.650042454
ILMN_1779670 7.439317571
ILMN_2321282 7.538709975
ILMN_1671474 7.397004647
ILMN_1772582 7.466492328
ILMN_1653355 7.650277251
ILMN_1717783 7.370770179
ILMN_1705025 7.409008953
ILMN_2359168 7.508456385
ILMN_1731507 7.343481699
ILMN_1787689 7.539511288
ILMN_1745607 7.4335366
ILMN_1668111 7.407560121
ILMN_1735045 7.47683958
ILMN_1680754 7.499282035
ILMN_1659452 7.543085586
ILMN_1767388 7.733080405
ILMN_1755321 7.585403532

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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