NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM150305 Query DataSets for GSM150305
Status Public on Dec 15, 2006
Title earlybird mutant cortex cem1 B
Sample type RNA
 
Source name cortex
Organism Mus musculus
Characteristics earlybird mutant cortex
Extracted molecule total RNA
Extraction protocol Approximately 50 mg of tissue was homogenized in 1 ml TriZol reagent and total RNA was extracted according to manufacture's protocol. Total RNA was cleaned up using an RNeasy kit (Qiagen).
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description cortex from earlybird mutant mouse
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 14, 2006
Last update date Dec 14, 2006
Contact name Maja Bucan
E-mail(s) [email protected]
Organization name UPENN
Street address 415 Curie Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL340
Series (1)
GSE6527 Earlybird mutation and knockout of Rab3a on gene expression in the cortex and hippocampus

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 260 P 0.015183
AFFX-BioB-M_at 257.8 P 0.00039
AFFX-BioB-3_at 127.7 P 0.015183
AFFX-BioC-5_at 560.3 P 0.000857
AFFX-BioC-3_at 275.4 P 0.000446
AFFX-BioDn-5_at 449.7 P 0.000147
AFFX-BioDn-3_at 3124.7 P 0.00039
AFFX-CreX-5_at 5168 P 0.000044
AFFX-CreX-3_at 7708 P 0.000044
AFFX-DapX-5_at 6 A 0.51489
AFFX-DapX-M_at 19.7 A 0.574038
AFFX-DapX-3_at 5.3 A 0.987453
AFFX-LysX-5_at 1.4 A 0.904333
AFFX-LysX-M_at 6 A 0.883887
AFFX-LysX-3_at 24.8 A 0.275146
AFFX-PheX-5_at 9.1 A 0.772364
AFFX-PheX-M_at 8.1 A 0.804734
AFFX-PheX-3_at 11.1 A 0.876428
AFFX-ThrX-5_at 9.1 A 0.860518
AFFX-ThrX-M_at 8 A 0.737173

Total number of rows: 22575

Table truncated, full table size 598 Kbytes.




Supplementary file Size Download File type/resource
GSM150305.CEL.gz 3.3 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap