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Status
Public on Oct 30, 2007
Title
IhoCa3, mother of the index patient IhoCa1
Sample type
RNA
Source name
blood
Organism
Homo sapiens Characteristics
blood
Extracted molecule
total RNA
Extraction protocol
PAXgene Blood RNA extraction
Label
biotin
Label protocol
standard Affymetrix procedures from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Gene expression data from human peripheral blood
Data processing
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Submission date
Nov 22, 2006
Last update date
Aug 28, 2018
Contact name
Antti Kokko
Organization name
University of Helsinki
Department
Dept of Medical Genetics
Lab
Tumorigenesis group
Street address
POBOX 63 (Haartmaninkatu 8)
City
Helsinki
ZIP/Postal code
00014 University of Helsinki
Country
Finland
Platform ID
GPL570 Series (1)
GSE6351 Expression data from peripheral blood from healthy and predisposed individuals
Relations Reanalyzed by
GSE64985 Reanalyzed by
GSE119087
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
207
P
0.000662
AFFX-BioB-M_at
689.8
P
0.000044
AFFX-BioB-3_at
339.3
P
0.000662
AFFX-BioC-5_at
827.4
P
0.000044
AFFX-BioC-3_at
1249.2
P
0.000044
AFFX-BioDn-5_at
1222.1
P
0.00007
AFFX-BioDn-3_at
3948.1
P
0.000044
AFFX-CreX-5_at
11492.5
P
0.000044
AFFX-CreX-3_at
16766.2
P
0.000044
AFFX-DapX-5_at
639.4
P
0.000052
AFFX-DapX-M_at
1763.4
P
0.000147
AFFX-DapX-3_at
1926.9
P
0.000052
AFFX-LysX-5_at
81.6
P
0.000081
AFFX-LysX-M_at
145.2
P
0.001796
AFFX-LysX-3_at
289.8
P
0.000044
AFFX-PheX-5_at
142.3
P
0.000052
AFFX-PheX-M_at
209.1
P
0.000052
AFFX-PheX-3_at
210
P
0.000127
AFFX-ThrX-5_at
182.8
P
0.000052
AFFX-ThrX-M_at
254.1
P
0.00007
54675 1409 Kbytes .Supplementary file Size Download File type/resource GSM146834.CEL.gz
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(ftp) (http) CEL
