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Status
Public on Oct 30, 2007
Title
Index patient IhoCa1
Sample type
RNA
Source name
blood
Organism
Homo sapiens Characteristics
blood
Extracted molecule
total RNA
Extraction protocol
PAXgene Blood RNA extraction
Label
biotin
Label protocol
standard Affymetrix procedures from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Gene expression data from human peripheral blood
Data processing
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Submission date
Nov 22, 2006
Last update date
Aug 28, 2018
Contact name
Antti Kokko
Organization name
University of Helsinki
Department
Dept of Medical Genetics
Lab
Tumorigenesis group
Street address
POBOX 63 (Haartmaninkatu 8)
City
Helsinki
ZIP/Postal code
00014 University of Helsinki
Country
Finland
Platform ID
GPL570 Series (1)
GSE6351 Expression data from peripheral blood from healthy and predisposed individuals
Relations Reanalyzed by
GSE64985 Reanalyzed by
GSE119087
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
211.7
P
0.000195
AFFX-BioB-M_at
776.7
P
0.000044
AFFX-BioB-3_at
368.3
P
0.000509
AFFX-BioC-5_at
951.5
P
0.000052
AFFX-BioC-3_at
1248.5
P
0.000044
AFFX-BioDn-5_at
1407.5
P
0.00007
AFFX-BioDn-3_at
4339.4
P
0.000044
AFFX-CreX-5_at
11685.6
P
0.000052
AFFX-CreX-3_at
17840.4
P
0.000044
AFFX-DapX-5_at
521.3
P
0.00007
AFFX-DapX-M_at
1215
P
0.000581
AFFX-DapX-3_at
1283.3
P
0.000052
AFFX-LysX-5_at
40
P
0.000581
AFFX-LysX-M_at
110.1
P
0.004998
AFFX-LysX-3_at
221.1
P
0.000044
AFFX-PheX-5_at
75.7
P
0.00007
AFFX-PheX-M_at
107
P
0.00039
AFFX-PheX-3_at
160.7
P
0.00034
AFFX-ThrX-5_at
136.3
P
0.000169
AFFX-ThrX-M_at
174.5
P
0.000258
54675 1410 Kbytes .Supplementary file Size Download File type/resource GSM146832.CEL.gz
4.4 Mb
(ftp) (http) CEL
