|
| Status |
Public on Oct 23, 2006 |
| Title |
sea urchin tiling array urchin21 (BC467) |
| Sample type |
RNA |
| |
|
| Source name |
Poly-A RNA from egg, early blastula (15hr.), early gastrula (30hr.) and late gastrula stage (45hr.) embryos of sea urchin.
|
| Organism |
Strongylocentrotus purpuratus |
| Characteristics |
RNA pooled from four early stages of sea urchin embryo
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
protocol is described in V. Stolc et al., Proc. Nat. Acad. Sci. USA 102, 4453 (2005).
|
| Label |
Cy3
|
| Label protocol |
Samples were mixed in equal quantities, reverse transcribed and fluorescently labeled.
|
| |
|
| Hybridization protocol |
Protocol is described in V. Stolc et al., Proc. Nat. Acad. Sci. USA 102, 4453 (2005).
|
| Scan protocol |
Features were scanned using Nimblescan software.
|
| Description |
A High-Resolution Transcriptome Map of the Sea Urchin Embryo
|
| Data processing |
Custom softwares were used for data processing. Normalization was performed to make the distribution of the common control probes identical in all arrays.
|
| |
|
| Submission date |
Oct 13, 2006 |
| Last update date |
Oct 26, 2006 |
| Contact name |
Manoj Samanta |
| E-mail(s) |
[email protected]
|
| Phone |
408-472-7927
|
| Organization name |
Systemix Institute
|
| Street address |
2240 Homestead Court #309
|
| City |
Los Altos |
| State/province |
CA |
| ZIP/Postal code |
94024 |
| Country |
USA |
| |
|
| Platform ID |
GPL4445 |
| Series (1) |
| GSE6031 |
A high-resolution transcriptome map of the sea urchin embryo |
|
